To use the scripts you need some knowledge how to use a command line interface on your operating system. The scripts are very simple to use on Linux and Mac OS X, but on Windows it is very tricky. I strongly advice you to use either Linux or Mac OS X. If you are working on Windows, just use a free virtual machine application and install a Linux (I suggest Ubuntu) or a Linux live CD where you don’t have to install anything.
Why? …. Why … that … complicated
The used microcontroller is not very fast, if the software on the microcontroller also has to deal with a complicated filesystem, no sequential blocks and other obstacles, changes are small to produce sound output in a good quality. Therefore I prepare the samples in a very simple format and instead of a complicated file system, I just store the blocks with the audio data sequentially onto the SD card.